RDKit: MorganGenerator.h File Reference

| RDKit Open-source cheminformatics and machine learning.

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Classes | Namespaces | Functions
MorganGenerator.h File Reference
`#include <RDGeneral/export.h>`
`#include <GraphMol/Fingerprints/FingerprintGenerator.h>`
`#include <cstdint>`

Go to the source code of this file.

## Classes
class | RDKit::MorganFingerprint::MorganAtomInvGenerator
| Default atom invariants generator for Morgan fingerprint, generates ECFP-type invariants. More...
class | RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator
| Alternative atom invariants generator for Morgan fingerprint, generate FCFP-type invariants. More...
class | RDKit::MorganFingerprint::MorganBondInvGenerator
| Bond invariants generator for Morgan fingerprint. More...
class | RDKit::MorganFingerprint::MorganArguments
| Class for holding Morgan fingerprint specific arguments. More...
class | RDKit::MorganFingerprint::MorganAtomEnv< OutputType >
| Class for holding the bit-id created from Morgan fingerprint environments and the additional data necessary extra outputs. More...
class | RDKit::MorganFingerprint::MorganEnvGenerator< OutputType >
| Class that generates atom environments for Morgan fingerprint. More...

## Namespaces
namespace | RDKit
| Std stuff.
namespace | RDKit::MorganFingerprint

## Functions
template<typename OutputType>
RDKIT_FINGERPRINTS_EXPORT FingerprintGenerator< OutputType > * | RDKit::MorganFingerprint::getMorganGenerator (unsigned int radius, bool countSimulation, bool includeChirality, bool useBondTypes, bool onlyNonzeroInvariants, bool includeRedundantEnvironments, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, std::uint32_t fpSize=2048, std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, bool ownsAtomInvGen=false, bool ownsBondInvGen=false)
| Get a fingerprint generator for Morgan fingerprint.
template<typename OutputType>
RDKIT_FINGERPRINTS_EXPORT FingerprintGenerator< OutputType > * | RDKit::MorganFingerprint::getMorganGenerator (const MorganArguments &args, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, bool ownsAtomInvGen=false, bool ownsBondInvGen=false)
| This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts.
template<typename OutputType>
FingerprintGenerator< OutputType > * | RDKit::MorganFingerprint::getMorganGenerator (unsigned int radius, bool countSimulation=false, bool includeChirality=false, bool useBondTypes=true, bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, std::uint32_t fpSize=2048, std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, bool ownsAtomInvGen=false, bool ownsBondInvGen=false)
| Get a fingerprint generator for Morgan fingerprint.